ChimeraX features for the visualisation and analysis of ligand/protein complexes.
ChimeraX is a powerful tool in the visualisation of molecules – see for example “UCSF ChimeraX: Structure visualization for researchers, educators, and developers. Pettersen EF, Goddard TD, Huang CC, Meng EC, Couch GS, Croll TI, Morris JH, Ferrin TE. Protein Sci. 2021 Jan;30(1):70-82”. Dr. Mark Gardner highlights some of the features of ChimeraX with a focus on protein ligand interactions & analysis of docking results
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Running AlphaFold to Predict Protein Complexes from ChimeraX
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UCSF Chimera: Structure Analysis
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PyMOL ligand-protein interactions | PyMOL tutorial | Protein Data Bank | Basic Science Series
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Evaluating AlphaFold protein-protein binding with ChimeraX
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How to Study Protein-Ligand Interaction through Molecular Docking
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Compare AlphaFold and Experimental Protein Structures in ChimeraX
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How to show AlphaFold error estimates with ChimeraX
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Tutorial: How to Model a 5Å Active Site in ChimeraX
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How to generate 2D and 3D Interaction Analysis Images for Protein-Ligand Complexes
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Analyzing the Structure of Cytochrome C with Chimera X
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