EP67: A General Guide to Different Spatial Transcriptomics Technologies Part1 (Xenium, MERSCOPE)

Spatial transcriptomics has revolutionized the study of single-cell gene expression in tissues, where spatial context is biologically meaningful. Numerous platforms have since emerged, each with distinct mechanisms of transcript capture and data processing pipelines. As a holistic spatial biology analysis platform, SpatialX enables users to work with data outputs from a multitude of spatial transcriptomics technologies, such as Xenium (10X Genomics), Visium (10X Genomics), GeoMx (Bruker), and MERSCOPE (Vizgen). In the upcoming SCSE Club webinar series, we will showcase how to submit data from different spatial transcriptomics systems into SpatialX and briefly summarize how each of these technologies works. 🗓️ Friday, February 27th, 2026 ⏰ 9 AM CET | 3 PM ICT | 5 PM JST 🔗 Register here: https://us02web.zoom.us/webinar/regis... What we will cover in the first session of this series: Submitting and interacting with Xenium images in SpatialX Submitting and interacting with MERSCOPE images in SpatialX

EP68: Mapping Transcriptomic Changes in Prostate Cancer Progression using SmartBulk
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EP68: Mapping Transcriptomic Changes in Prostate Cancer Progression using SmartBulk

Ben Raphael | Models and Methods for Spatial Transcriptomics | CGSI 2023
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Ben Raphael | Models and Methods for Spatial Transcriptomics | CGSI 2023

EP69 (EU/Asia Session): How to Work with CosMx Data on SpatialX?
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EP69 (EU/Asia Session): How to Work with CosMx Data on SpatialX?

EP69 (US Session): Analyzing CosMx Data on SpatialX
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EP69 (US Session): Analyzing CosMx Data on SpatialX

Self-supervised spatial features for protein detection in crowded cryo-ET tomograms | Bogdan Toader
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Self-supervised spatial features for protein detection in crowded cryo-ET tomograms | Bogdan Toader

The Physics of Euler's Formula | Laplace Transform Prelude
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The Physics of Euler's Formula | Laplace Transform Prelude

EP73: Exploring Protein Signatures in Frontotemporal Dementia
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EP73: Exploring Protein Signatures in Frontotemporal Dementia

EP75 (EU/Asia Session): 10x Genomics Atera & Image Alignment on SpatialX
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EP75 (EU/Asia Session): 10x Genomics Atera & Image Alignment on SpatialX

Nobel Prize lecture: Demis Hassabis, Nobel Prize in Chemistry 2024
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Nobel Prize lecture: Demis Hassabis, Nobel Prize in Chemistry 2024

But what is a Laplace Transform?
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But what is a Laplace Transform?

How to Build Endurance | Huberman Lab Essentials
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How to Build Endurance | Huberman Lab Essentials

EP72: SpatialX for TME Analysis in Colorectal Cancer & Liver Metastasis
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EP72: SpatialX for TME Analysis in Colorectal Cancer & Liver Metastasis

EP 77 (EU/Asia): Cell Surface Target Discovery Workflow using Talk2Data BioFlex MCP and Agentic AI
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EP 77 (EU/Asia): Cell Surface Target Discovery Workflow using Talk2Data BioFlex MCP and Agentic AI

How AI Cracked the Protein Folding Code and Won a Nobel Prize
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How AI Cracked the Protein Folding Code and Won a Nobel Prize

But what is the Fourier Transform?  A visual introduction.
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But what is the Fourier Transform? A visual introduction.

EP70: Building Single-Cell Atlases to Profile Nectin-4 for Antibody-Drug Conjugate (ADC) Development
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EP70: Building Single-Cell Atlases to Profile Nectin-4 for Antibody-Drug Conjugate (ADC) Development

EP71: Investigate organ-level wound healing mechanisms in mice with BBrowserX Pro
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EP71: Investigate organ-level wound healing mechanisms in mice with BBrowserX Pro

EP75 (US Session): 10x Genomics Atera & Image Alignment on SpatialX
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EP75 (US Session): 10x Genomics Atera & Image Alignment on SpatialX

EP76: Investigating Kidney Function with scRNA-seq
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EP76: Investigating Kidney Function with scRNA-seq

Through the Unlabeled Lens of Spatial Multi-Omics
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Through the Unlabeled Lens of Spatial Multi-Omics