Tutorial 1 – Getting Started with UCSF Chimera
This tutorial series will enable viewers to become proficient in using UCSF Chimera (https://www.cgl.ucsf.edu/chimera/), an extensible molecular modeling software. Topics covered range from foundational selections and actions to more complex subjects like structure analysis and animation. Access the full series: https://pdb101.rcsb.org/learn/videos/... Video Guide: 00:00 Introduction to UCSF Chimera 00:12 Understanding macromolecule data from rcsb.org 01:09 Chimera software download and orientation 01:47 Opening and importing structure files 02:23 Mouse controls for structure manipulation 03:10 Saving an image from the graphics window 04:13 Saving, restoring, and ending a session in Chimera 04:36 Biological assembly vs. Asymmetric unit
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Tutorial 2 – Menu Selections & Basic Actions
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AlphaFold - The Most Useful Thing AI Has Ever Done
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Tutorial 3 – Advanced Selections
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PyMOL: Active Sites in Minutes (Using only Sequence Info!)
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Tutorial 4 – Further Depiction Options
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Tutorial 5 – Structure Analysis & Comparison
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Tutorial 6 – Creating an Animation
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ADHD Relief Music, Study Music for Focus and Concentration, Work Music
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ChimeraX Tutorial: Structural Analysis and Alignments | Brown Lab
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How to create beautiful molecular visualizations with ChimeraX - a beginner's guide
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Analyzing the Structure of Cytochrome C with Chimera X
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Evaluating AlphaFold protein-protein binding with ChimeraX
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Protein Visualization Tool | PyMOL Tutorial for Beginners
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How to color proteins in a cryoEM map with ChimeraX
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Predict a protein structure using AlphaFold within ChimeraX
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TUTORIAL: Introduction to ChimeraX
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ChimeraX features for the visualisation and analysis of ligand/protein complexes.
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How to use Google Colab Alphafold2 and ChimeraX
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Molecular Docking using AutoDock Vina and UCSF Chimera
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