Automatic whole-body CT segmentation in 2 minutes using 3D Slicer and TotalSegmentator

Short tutorial of 3D Slicer's TotalSegmentator extension that can segment over 100 structures in any whole-body (chest/abdominal) CT image in about 2 minutes. Only free, restriction-free, open-source software is used. 3D Slicer extension: https://github.com/lassoan/SlicerTota... TotalSegmentator: https://github.com/wasserth/TotalSegm... 3D Slicer: https://www.slicer.org Installation instructions: https://github.com/lassoan/SlicerTota... Any questions or comments? https://discourse.slicer.org/t/26710 If you use the TotalSegmentator in your research, please cite: Wasserthal J., Meyer M., , Hanns-Christian Breit H.C., Cyriac J., Shan Y., Segeroth, M.: TotalSegmentator: robust segmentation of 104 anatomical structures in CT images. https://arxiv.org/abs/2208.05868

TotalSegmentator + 3D Slicer | From DICOM to Full 3D Before Your Coffee Gets Cold ☕
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TotalSegmentator + 3D Slicer | From DICOM to Full 3D Before Your Coffee Gets Cold ☕

Tutorial: Ct scan to 3D print in 15 minutes using free software only.
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Tutorial: Ct scan to 3D print in 15 minutes using free software only.

How To 3D Print Your Brain In A Few Simple Steps - TUTORIAL 2022
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How To 3D Print Your Brain In A Few Simple Steps - TUTORIAL 2022

How to build a full body ultrasound
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How to build a full body ultrasound

3D Slicer Tutorial #3: Scissors. Grow from seeds.
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3D Slicer Tutorial #3: Scissors. Grow from seeds.

nnU-Net, a Self-configuring Method for Deep Learning-based Biomedical Image Segmentation: F. Isensee
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nnU-Net, a Self-configuring Method for Deep Learning-based Biomedical Image Segmentation: F. Isensee

How to segment multiple vertebrae in spine CT for 3D printing
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How to segment multiple vertebrae in spine CT for 3D printing

Whole heart segmentation from cardiac CT in 10 minutes
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Whole heart segmentation from cardiac CT in 10 minutes

Part 1 - Using 3D Slicer to create a human skull and orbit model from a CT scan - SIMPLE METHOD
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Part 1 - Using 3D Slicer to create a human skull and orbit model from a CT scan - SIMPLE METHOD

3D Slicer Tutorial (2026): Brain Tumor MRI Segmentation + Volume Calculation + 3D Model
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3D Slicer Tutorial (2026): Brain Tumor MRI Segmentation + Volume Calculation + 3D Model

Slicer 3D for Volumetric Image Segmentation/labelling - Basic segmentation usage
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Slicer 3D for Volumetric Image Segmentation/labelling - Basic segmentation usage

Creating 3D Printable Medical Models for Free: Embodi3D.com, 3D Slicer, and Meshmixer
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Creating 3D Printable Medical Models for Free: Embodi3D.com, 3D Slicer, and Meshmixer

3D Slicer Tutorial: Pelvic Bone Segmentation
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3D Slicer Tutorial: Pelvic Bone Segmentation

3D Slicer Tutorial #7: Surface vs Volume Rendering
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3D Slicer Tutorial #7: Surface vs Volume Rendering

Airway segmentation in 3D Slicer with "Grow from Seeds"
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Airway segmentation in 3D Slicer with "Grow from Seeds"

Creating 3D Printable Models from Medical Scans in 30 Minutes Using Free Software
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Creating 3D Printable Models from Medical Scans in 30 Minutes Using Free Software

3D Slicer Tutorial #4: Smoothing. Plugins.
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3D Slicer Tutorial #4: Smoothing. Plugins.

3D Segmentation Workshop - Dicom to STL model using 3D slicer
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3D Segmentation Workshop - Dicom to STL model using 3D slicer

Tutorial 5 - Manual, Semi-Automatic and Fully Automatic Segmentation Using 3D Slicer
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Tutorial 5 - Manual, Semi-Automatic and Fully Automatic Segmentation Using 3D Slicer

How-To: Creating a 3D Reconstruction of Your Patient's CT Scan
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How-To: Creating a 3D Reconstruction of Your Patient's CT Scan