ImageJ/Fiji Macro Language - [NEUBIASAcademy@Home] Course

ImageJ Macro Language is an easy-to-learn scripting language built into ImageJ/Fiji. This video shows how to use it to automate image processing/analysis workflows. Material: https://github.com/ahklemm Please post questions related to the material on: https://forum.image.sc/t/neubias-acad... Content: 0:03:57 Workflow to get outline of nuclear membrane and measure. 0:10:24 ImageJ Macro Recorder and Batch Processor 0:22:35 Variables - Theory 0:37:22 Built-In Macro Functions 0:45:04 Ask for User Input 0:51:04 For-Loops 1:07:17 Batch-Processing 1:09:02 Arrays - Theory 1:20:27 If-statements 1:25:51 Good Practice 1:28:10 Where to continue Author: Anna Klemm, BioImageInformatics Facility, SciLifeLab, Sweden Given as a interactive course 14th/15th of April 2020 at NEUBIAS Academy together with Christian Tischer (EMBL Heidelberg), Fabrice Cordelières (BIC, Univ. Bordeaux), Ofra Golani (Weizmann Institute, Rehovot), Romain Guiet (EPFL, Lausanne), Bram van den Broek (NKI, Amsterdam), Elnaz Fazeli (Turku University), and Rocco d’Antuono (Francis Crick Institute, London).