TASSEL Workshop Part 2: LD, PCA, Kinship, and GWAS

The University of Minnesota Plant Breeding Center hosts a workshop of the software package TASSEL (Trait Analysis by aSSociation, Evolution and Linkage) from the Buckler Lab at Cornell University. Overview of TASSEL functions including file format conversion, genotype imputation (Part 1) and LD, PCA, Kinship, and GWAS (Part 2). Part 1:    • TASSEL Workshop Part 1: overview, resource...   Install TASSEL: https://www.maizegenetics.net/tassel Presentation slides and sample data used during the workshop: https://github.com/SushanRu/TASSEL-wo... 0:36 Example files overview 6:11 Phenotype data summary 8:23 Genotype data summary 13:22 Linkage Disequilibrium (LD) 19:12 Principle Component Analysis (PCA) 26:51 Kinship 28:25 Genome-wide Association Study (GWAS) Instructors: Dr. Sushan Ru, email: [email protected] Dr. Prabin Bajgain, email: [email protected] Like and follow the Plant Breeding Center for more:   / umnplantbreed     / plant-breeding-center-university-of-minnesota   Find the latest news and info on our opportunities for plant breeding collaboration and education: https://plantbreed.umn.edu/