15 Bioinformatics Project Ideas

Learn more about the remote graduate MS and PhD programs from the University of Florida's Department of Microbiology & Cell Science: https://microbiologyonline.ifas.ufl.e... 15 Bioinformatics Project Ideas: 00:26 Project 1: Reproduce figures with Supplementary data 01:13 Project 2: Reproduce ChIP-seq figures from a paper 01:35 Project 3: Reproduce RNA-seq results from a paper 02:03 Project 4: Benchmark bedtools vs. mosdepth for coverage calculations 02:51 Project 5: Effect of subsampling on metagenomics abundance 03:46 Project 6: Effect of subsampling on variant calling accuracy 04:20 Project 7: Does the order of reads in a FASTQ affect downstream analyses? 04:57 Project 8: Parallelization using multiple threads vs. split up the data and use single threads on each file 07:09 Project 9: Build a web app for running bioinformatics analyses 07:40 Project 10: Build a visualization tool for bioinformatics file formats 08:00 Project 11: Build a debugging tool for complex file formats 08:24 Project 12: Contribute to an existing bioinformatics tool 08:56 Project 13: Write an (interactive?) article about statistical concepts 09:13 Project 14: Write an (interactive?) article about bloom filters 09:37 Project 15: Write an (interactive?) article about k-mers and minimizers More project ideas: Our previous Bioinformatics Project Ideas video:    • Bioinformatics project ideas   Genes and geography Project:    • Genes and geography -- a bioinformatics pr...   RNA-seq Project:    • RNA-seq tutorial with DESeq2: Differential...   Project ideas from the Schatz lab: https://github.com/schatzlab/appliedg... Useful links: Find papers to reproduce in Nature Communications: https://www.nature.com/subjects/biolo... Ming Tang's blog post on reproducing ChIP-seq analysis from a paper: https://crazyhottommy.github.io/repro... Alexander Lab tutorial on reproducing RNA-seq results from a paper: https://alexanderlabwhoi.github.io/BV... Biowasm library for running bioinformatics CLI tools in the browser: https://biowasm.com JavaScript library for creating bloom filters in the browser: https://github.com/Callidon/bloom-fil...