Fereydoun Hormozdiari | Mapping free Genome Analysis | CGSI 2025

Fereydoun Hormozdiari | Mapping free Genome Analysis | CGSI 2025 Related Papers: Denti, L., Khorsand, P., Bonizzoni, P., Hormozdiari, F., & Chikhi, R. (2023). SVDSS: structural variation discovery in hard-to-call genomic regions using sample-specific strings from accurate long reads. Nature Methods, 20(4), 550-558. Khorsand, P., & Hormozdiari, F. (2019). Nebula: Ultra-efficient mapping-free structural variant genotyper. bioRxiv. Shajii, A., Yorukoglu, D., William Yu, Y., & Berger, B. (2016). Fast genotyping of known SNPs through approximate k-mer matching. Bioinformatics, 32(17), i538-i544. Narzisi, G., O'rawe, J. A., Iossifov, I., Fang, H., Lee, Y. H., Wang, Z., ... & Schatz, M. C. (2014). Accurate de novo and transmitted indel detection in exome-capture data using microassembly. Nature methods, 11(10), 1033-1036. Rahman, A., Hallgrímsdóttir, I., Eisen, M., & Pachter, L. (2018). Association mapping from sequencing reads using k-mers. Elife, 7, e32920.