Burrows-Wheeler Transform, part 2
We discuss the LF mapping property and show how to reverse the Burrows-Wheeler Transform. ── Course & channel links ── Course playlist: Burrows-Wheeler Indexing • Burrows-Wheeler Indexing ── About the author ── Ben Langmead is a Professor of Computer Science at Johns Hopkins University, where his research spans bioinformatics, computational biology, and data-intensive science. He is the author of Bowtie and Bowtie 2; his group has also developed software like Kraken 2 and resources like recount3 and Index Zone, as well as methods for pangenome indexing and querying, based on e.g. the r-index and move structure. His group's methods have been cited over 130,000 times, and he is the winner of awards including an NSF CAREER award, a Sloan Research Fellowship, the Benjamin Franklin award for contributions to open access, and multiple awards for teaching and mentorship. Ben is the founder and principal of InOrder Labs LLC (https://inorderlabs.com), an expert consulting firm in bioinformatics and computational biology. Channel: / @benlangmead Teaching materials: https://langmead-lab.org/teaching.html

Bitvectors and rank/select

Burrows-Wheeler Transform, part 1

Wavelet trees, part 1

Burrows-Wheeler Transform

Data Compression (Summer 2023) - Lecture 12 - The Burrows-Wheeler Transform (BWT)

FM Index, part 2: efficient matching

Something is jamming GPS over Europe. Here's what we found

de Bruijn Graph (DBG) based assembly #swayamprabha #ch17sp

AlphaFold - The Most Useful Thing AI Has Ever Done

Intro: Indexing

4 Hours of Deep Focus Music for Studying - Concentration Music For Deep Thinking And Focus

Suffix trees: definition & size

CountMin sketch, part 1

The Strange Math That Predicts (Almost) Anything

Move structure, part 1

Entropy (for data science) Clearly Explained!!!

6 Hour Study Music, Alpha Waves, Studying Music, Calm Music, Focus Music, Concentration Music ☯161

Overlap-Layout-Consensus (OLC) approach #swayamprabha #ch17sp

