PyMOL fundamentals

This video covers basic navigation and features, and using Uniprot and PDB in combination with PyMOL to find and show a protein with key residues in stick. More on PyMOL: https://bit.ly/pymolintro more on the PDB: https://bit.ly/pdbstructures &    • An overview of PDB (Protein Data Bank) ent...   more on UniProt: https://bit.ly/uniprotprotparam &    • Using UniProt and related tools to get inf...   more on PKU: http://bit.ly/pkustoryandscience And more on the expansion to extended, 12-character, PDB IDs here: blog: https://thebumblingbiochemist.com/365... ; YouTube:    • Extended PDB IDs and PDBx/mmCIF files - Ma...   Acevedo, R., & Procko, K. (Eds.). (2025). Seeing the Invisible: Learning to Teach with Biomolecular Visualization. The University of Texas at Austin. https://doi.org/10.15781/m4zd-7691 (1) My chapter: https://utexas.pressbooks.pub/molviz-... Structural biology resources - guide to my favorite software, articles, books, lectures, websites   downloadable version: https://bit.ly/structure_guide ; YouTube:    • Structural biology resources - guide to my...     If you need a refresher on X-ray crystallography, start here: http://bit.ly/xraycrystallography2     and I made a page on my blog that has links to all my structural biology posts: https://bit.ly/structural_biology     and here's a link to my YouTube structural biology playlist:    • Structural biology       here are some key posts:   resolution: blog: https://bit.ly/structure_resolution ; YouTube:    • It's just a model! Understanding x-ray cry...        • Viewing maps & evaluating resolution (glob...    and this intro video: YouTube:    • Resolution of molecular structures - an ov...          understanding crystal structures: https://bit.ly/crystalstructuremodels &    • Understanding x-ray crystallography struct...          intro to PDB, crystal structure entries, crystal contents, resolution: https://bit.ly/pdbstructures &    • Intro to PDB (Protein Data Bank) crystal s...   &    / izthsufbye    maps: blog: https://bit.ly/xraymaps ; YouTube:    • X-ray crystallography maps (viewing & unde...          PyMOLWiki: https://pymolwiki.org/index.php/Main_... Tutorial videos: Chris Berndsen – SeamDock: https://www.loom.com/share/490bd9ffda... Swanson Does Science, PyMOL for Beginners - video 1: orientation – Using the mouse:    • Pymol for Beginners - video 1: orientation   min 10-11:20 The bumbling biochemist: PyMol tips to not lose orientations & styling: save views, scenes, & selections    • PyMol tips to not lose orientations & styl...    The bumbling biochemist: PyMol tips: hide → unselected; copy to object; extract to object; export molecule, etc.    • PyMol tips: hide → unselected; copy to obj...   Shows how to show monomer with NAD & malate Molecular memory PyMOL 101 PyMOL 101 Lesson 2: Basic Selection, Show, Hide, and Actions Menus (Carbonic Anhydrase Active Site)    • PyMOL 101 Lesson 2: Basic Selection, Show,...   PyMOL 101, Lesson 4: Color, Transparency, and Alternate Renderings    • PyMOL 101, Lesson 4: Color, Transparency, ...   PyMOL 101, Lesson 5: Select by Distance, the Mouse Control Menu, and Labeling    • PyMOL 101, Lesson 5: Select by Distance, t...   PyMOL 101, Lesson 6: Introduction to the measurement wizard & polar contacts, the N- & C-terminus    • PyMOL 101, Lesson 6: Introduction to the m...   more about all sorts of things: #365DaysOfScience All (with topics listed) 👉 http://bit.ly/2OllAB0 or search blog: http://thebumblingbiochemist.com