Running MACS2 on ChIP-seq data

This video details how to run the peak caller MACS2 on ChIP-seq data within a slurm scheduler. Credit: by ___, 2017 This video is part of the DnA Lab short read sequencing workshop run every summer in Boulder, Colorado. For more information go to http://dna.colorado.edu/education.html.

Join Today
2019 STAT115 Lect11.2 ChIP-seq Peak Calling and QC
▶︎

2019 STAT115 Lect11.2 ChIP-seq Peak Calling and QC

An introduction to ChIP-seq analysis
▶︎

An introduction to ChIP-seq analysis

STAT115 Chapter 11.2 ChIP-seq Peak Calling with MACS and QC
▶︎

STAT115 Chapter 11.2 ChIP-seq Peak Calling with MACS and QC

Lecture 15: Recursion
▶︎

Lecture 15: Recursion

Multifactor Designs in DESeq2
▶︎

Multifactor Designs in DESeq2

Single Cell Sequencing - Eric Chow (UCSF)
▶︎

Single Cell Sequencing - Eric Chow (UCSF)

The FULL VIDEO of Trump they didn’t want released
▶︎

The FULL VIDEO of Trump they didn’t want released

StatQuest: A gentle introduction to ChIP-Seq
▶︎

StatQuest: A gentle introduction to ChIP-Seq

Turing Award Winner: Disagreeing with Google, Postgres, Future Problems | Mike Stonebraker
▶︎

Turing Award Winner: Disagreeing with Google, Postgres, Future Problems | Mike Stonebraker

ChIP-seq Analysis Using Galaxy (2015) - Part 4: Peak calling
▶︎

ChIP-seq Analysis Using Galaxy (2015) - Part 4: Peak calling

[WEBINAR] Intro to Bioinformatics Pipelines for ChIP-Seq
▶︎

[WEBINAR] Intro to Bioinformatics Pipelines for ChIP-Seq

ChIP-seq Peak Calling: FASTQ to Peaks with MACS2, HOMER & Bedtools
▶︎

ChIP-seq Peak Calling: FASTQ to Peaks with MACS2, HOMER & Bedtools

Robust statistics applied to EEG data #5: Correction for multiple comparisons
▶︎

Robust statistics applied to EEG data #5: Correction for multiple comparisons

Jo Hardin | Selecting Between sample ChIP Seq Normalization Methods From The Perspective of Their As
▶︎

Jo Hardin | Selecting Between sample ChIP Seq Normalization Methods From The Perspective of Their As

He Once Worked at Subway. At 58, He Solved An "Impossible" Problem
▶︎

He Once Worked at Subway. At 58, He Solved An "Impossible" Problem

Workshop: Quantitative ChiP seq
▶︎

Workshop: Quantitative ChiP seq

ChIP-Seq analysis and visualization using Galaxy and IGB
▶︎

ChIP-Seq analysis and visualization using Galaxy and IGB

Creator of C++: Bell Labs, Negative Overhead Abstraction, Mistakes | Bjarne Stroustrup
▶︎

Creator of C++: Bell Labs, Negative Overhead Abstraction, Mistakes | Bjarne Stroustrup

Who Is Really Winning the AI Race? Follow the Money
▶︎

Who Is Really Winning the AI Race? Follow the Money

Introduction to BEDTools
▶︎

Introduction to BEDTools